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GS_0023LK1.1

Display Name: China/GS_0023LK1.1/2024-10-23
Y. Feng, H. Zhong, M. Jiang & W. Li

Submission details

Submission ID
PV571662.1
Submitting group
Date submitted
2025-06-30 20:19:15 UTC
Date released
2025-06-30 20:58:34 UTC

Authors

Author affiliations
Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection and Analyses

Clade & Lineage

Clade
1IV_B.2

Alignment states and QC metrics

Completeness
98.58%
Length
10583
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
368
Total unknown nucs
0

Sample details

Collection country
China
Collection subdivision level 1
Sichuan
Collection date
2024-10-23
Isolate name
SCDen24-92

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-05-03
NCBI update date
2025-05-03

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • G302A
  • A355G
  • A390G
  • C412T
  • G433A
  • C439T
  • T442C
  • A454G
  • G457A
  • C538T
  • C599A
  • A616G
  • C712T
  • A733G
  • T742C
  • A789G
  • C811T
  • C865T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001477.1 reference

    Substitutions

    C

  • C:G70S
  • C:K99R

    • E

  • E:V139I
  • E:K203E
  • E:I293T
  • E:M297V
  • E:I378L
  • E:L462M

    • NS1

  • NS1:S94N
  • NS1:I123V
  • NS1:N146D
  • NS1:A213T
  • NS1:I246T
  • NS1:D278G
  • NS1:T307I

    • NS2A

  • NS2A:T148A
  • NS2A:F159L
  • NS2A:V175I
  • NS2A:L182M

    • NS3

  • NS3:R33K
  • NS3:A91T
  • NS3:V323M
  • NS3:V332A
  • NS3:V384I
  • NS3:D437E

    • NS4A

  • NS4A:I89M

    • NS4B

  • NS4B:A18V
  • NS4B:N22S

    • NS5

  • NS5:I34M
  • NS5:I181V
  • NS5:A245T
  • NS5:R253K
  • NS5:S629L
  • NS5:A639G
  • NS5:K647E
  • NS5:F881Y

    • prM

  • prM:K118R
    • Deletions
    None
    Insertions
    None