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Display Name: China/GS_0023P3X.1/2024-09-12
S. Li

Submission details

Submission ID
PV789653.1
Date submitted
2025-06-30 20:19:15 UTC
Date released
2025-06-30 20:58:34 UTC

Authors

Author affiliations
Institute of Medical Biology, Chinese Academy of Medical Sciences, Institute of Medical Biology

Clade & Lineage

Clade
1I_K.1.1

Alignment states and QC metrics

Completeness
100.00%
Length
10734
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
788
Total unknown nucs
0

Sample details

Collection country
China
Collection subdivision level 1
Yunnan,Xishuangbanna
Collection date
2024-09-12
Isolate name
KM24DFY

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-06-21
NCBI update date
2025-06-21

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • A25G
  • A65G
  • G120C
  • T173C
  • C206T
  • T208C
  • A217G
  • T230C
  • T262C
  • A286G
  • C304T
  • T335C
  • A363G
  • T368C
  • C373T
  • C382T
  • G385A
  • A401G
  • Deletions
    10463
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001477.1 reference

    Substitutions

    C

  • C:G9A
  • C:S27P
  • C:L38F
  • C:N90S
  • C:T103A
  • C:L109M
  • E

  • E:N8S
  • E:N52D
  • E:T88A
  • E:T155S
  • E:S171T
  • E:K203E
  • E:S225A
  • E:I293T
  • E:V324I
  • E:S339T
  • E:V380I
  • E:I436V
  • E:I461V
  • E:M484L
  • NS1

  • NS1:S94A
  • NS1:N146D
  • NS1:D278G
  • NS1:T307I
  • NS1:K324R
  • NS2A

  • NS2A:L41F
  • NS2A:T44I
  • NS2A:K67R
  • NS2A:R82K
  • NS2A:V106I
  • NS2A:M133I
  • NS2A:V155I
  • NS2A:F159V
  • NS2A:I171V
  • NS2A:T210A
  • NS2B

  • NS2B:I106V
  • NS2B:M112L
  • NS2B:K127R
  • NS3

  • NS3:L26M
  • NS3:G44N
  • NS3:F85L
  • NS3:A91T
  • NS3:V221I
  • NS3:A293S
  • NS3:D350E
  • NS3:V384I
  • NS3:Q466H
  • NS3:S517N
  • NS4A

  • NS4A:K39R
  • NS4A:I89M
  • NS4A:A93V
  • NS4B

  • NS4B:A18V
  • NS4B:A20V
  • NS4B:A27T
  • NS5

  • NS5:I34M
  • NS5:T135M
  • NS5:N285H
  • NS5:R325K
  • NS5:V413I
  • NS5:T565E
  • NS5:S566A
  • NS5:G626R
  • NS5:E640K
  • NS5:K647E
  • NS5:H649Y
  • NS5:T651V
  • NS5:V829I
  • NS5:F881Y
  • prM

  • prM:T59A
  • prM:E72D
  • prM:K122R
  • Deletions
    None
    Insertions
    None