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GS_002AZ7Z.1
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Display Name: USA/GS_002AZ7Z.1/2024-12-14
M. Mitchell,
Y. Dong,
O. Tekin &
Y. Huang
Submission details
Submission ID
PX395888.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-08 14:10:35 UTC
Date released
2025-10-08 14:39:48 UTC
Authors
Author affiliations
FLDOH, BPHL
INSDC
Bioproject accession
PRJNA973096
Biosample accession
SAMN51637515
INSDC accession
PX395888.1
NCBI release date
2025-09-24
NCBI update date
2025-09-24
SRA run accession
SRR35515482
Clade & Lineage
Clade
1V_D.1
Alignment states and QC metrics
Completeness
98.51%
Length
10575
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
847
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
FL
Collection date
2024-12-14
Isolate name
DENV-1/USA/FL-BPHL-0239/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
T
172
C
T
244
C
C
253
T
T
274
C
T
295
C
G
302
A
C
310
T
G
325
A
A
331
G
G
349
A
A
355
G
A
363
G
T
397
C
C
443
T
C
451
A
G
466
A
T
478
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
T
163
I
E:
K
203
E
E:
I
293
T
E:
S
339
T
E:
A
369
T
E:
I
436
V
E:
I
439
V
E:
I
457
V
NS1
NS1:
A
60
V
NS1:
V
93
A
NS1:
S
94
N
NS1:
A
98
T
NS1:
V
128
T
NS1:
N
139
D
NS1:
D
145
N
NS1:
N
146
G
NS1:
V
178
M
NS1:
I
224
T
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
L
12
I
NS2A:
I
15
V
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
D
139
E
NS2A:
S
142
P
NS2A:
A
147
T
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
M
168
T
NS2A:
I
171
V
NS2A:
L
199
F
NS2B
NS2B:
V
11
I
NS2B:
E
63
Q
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
M
NS3:
V
100
L
NS3:
A
112
T
NS3:
R
185
K
NS3:
K
214
R
NS3:
V
221
I
NS3:
K
255
R
NS3:
V
384
I
NS3:
I
474
V
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
T
NS4A:
A
93
V
NS4A:
R
125
K
NS4B
NS4B:
H
17
Y
NS4B:
A
18
V
NS4B:
A
20
T
NS4B:
H
24
Q
NS4B:
A
27
T
NS4B:
H
34
R
NS4B:
I
48
V
NS5
NS5:
T
27
I
NS5:
I
34
M
NS5:
Y
127
H
NS5:
T
135
M
NS5:
H
200
Y
NS5:
K
364
R
NS5:
A
370
T
NS5:
R
378
K
NS5:
A
616
V
NS5:
S
629
L
NS5:
K
647
G
NS5:
T
651
A
NS5:
T
675
V
NS5:
D
834
E
NS5:
F
881
Y
prM
prM:
T
59
A
prM:
E
72
D
prM:
D
89
E
prM:
K
122
R
Deletions
None
Insertions
None
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