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GS_0050ZPH.1
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Display Name: USA/GS_0050ZPH.1/2025-02-18
USDA Swine Surveillance,
A.; Lin,
K.; Dohrn,
C.
Submission details
Submission ID
PV353930.1.seg4/PV353931.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 08:01:46 UTC
Date released
2025-04-03 10:23:07 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
1
Alignment states and QC metrics seg4
Completeness seg4
97.09%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
168
Total unknown nucs seg4
0
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2025-02-18
Isolate name
A02858384
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV353930.1
INSDC accession seg6
PV353931.1
NCBI release date
2025-03-20
Alignment states and QC metrics seg6
Length seg6
1410
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
seg4:
A
30
G
seg4:
T
41
C
seg4:
T
54
G
seg4:
G
57
A
seg4:
A
71
C
seg4:
T
89
C
seg4:
G
98
A
seg4:
A
110
T
seg4:
T
116
C
seg4:
T
161
C
seg4:
G
174
A
seg4:
G
179
A
seg4:
C
185
T
seg4:
G
209
A
seg4:
C
215
T
seg4:
G
221
A
seg4:
T
236
C
seg4:
C
248
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
D
35
N
HA1:
I
61
L
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
86
E
HA1:
D
97
N
HA1:
T
120
A
HA1:
S
128
T
HA1:
H
138
Y
HA1:
A
141
T
HA1:
K
142
N
HA1:
K
146
R
HA1:
K
153
Q
HA1:
L
161
V
HA1:
S
162
N
HA1:
D
168
N
HA1:
G
170
E
HA1:
G
178
A
Show more
HA2
HA2:
V
18
I
HA2:
N
43
S
HA2:
E
47
G
HA2:
N
71
S
HA2:
N
146
D
HA2:
T
147
M
HA2:
D
174
N
SigPep
SigPep:
I
4
V
SigPep:
F
12
V
SigPep:
A
13
T
Deletions
None
Insertions
None
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