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GS_00513LH.1
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Display Name: Germany/GS_00513LH.1/2025-02-27
Gruner,
W. E.; Muehleman,
D. M.; Fries,
A. C.; Hanson,
J. F.; Kramer,
D. L.; Demarcus,
L. S.; Wasik,
P. M.; Robbins,
A. S.; Macias,
E. A.; Garcia,
J. M.; Renkas,
M. C.; Hartless,
T. R.; Hardy,
J.
Submission details
Submission ID
PV424700.1.seg4/PV424783.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 08:01:46 UTC
Date released
2025-04-03 10:23:07 UTC
Authors
Author affiliations
United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing
Clade
Clade HA
6B.1A.5a.2a.1
Clade NA
C.5.3.1
Alignment states and QC metrics seg4
Completeness seg4
97.09%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
104
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.39%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
17
Total unknown nucs seg6
0
Sample details
Collection country
Germany
Collection subdivision level 1
Bayern
Collection date
2025-02-27
Isolate name
USAFSAM-15730
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg4
PV424700.1
INSDC accession seg6
PV424783.1
NCBI release date
2025-04-01
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
G
126
A
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
C
215
T
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
416
A
seg4:
A
429
G
seg4:
C
443
T
Show more
seg6
seg6:
C
452
A
seg6:
G
607
A
seg6:
A
658
G
seg6:
C
718
T
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
854
T
seg6:
C
893
T
seg6:
G
914
T
seg6:
A
1049
G
seg6:
C
1187
T
seg6:
A
1193
G
seg6:
C
1355
T
seg6:
G
1365
A
seg6:
T
1403
C
seg6:
G
1415
T
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
V
19
I
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
NA
NA:
S
200
N
NA:
K
217
R
NA:
S
237
F
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
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