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GS_005VKKE.1

Display Name: USA/GS_005VKKE.1/2024-12-11
Kirby, M. K.; Steel, J.; Garten, R.; Davis, T.; Dugan, V.; Sheffield, S.; Liddell, J.; Frederick, J. C.; Di, H.; Radford, K.; De La Cruz, J.; Keong, L.; Lacek, K. A.; Shu, B.; Schatzman, S.; Nguyen, H.; Haydel, D.; Sokol, T.; Salinas, A.; Hand, J.; Le, P.; Bunch, A.

Submission details

Submission ID
PQ809556.1.seg1/PQ809554.1.seg2/PQ809555.1.seg3/PQ809550.1.seg4/PQ809553.1.seg5/PQ809551.1.seg6/PQ809552.1.seg7/PQ809549.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-15 06:27:28 UTC
Date released
2025-01-15 06:40:59 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-15 06:29insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg1
PQ809556.1
INSDC accession seg2
PQ809554.1
INSDC accession seg3
PQ809555.1
INSDC accession seg4
PQ809550.1
INSDC accession seg5
PQ809553.1
INSDC accession seg6
PQ809551.1
INSDC accession seg7
PQ809552.1
INSDC accession seg8
PQ809549.1
NCBI release date
2024-12-26

Sample details

Collection country
USA
Collection subdivision level 1
Louisiana
Collection date
2024-12-11
Isolate name
EPI_ISL_19634827

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2316

Alignment states and QC metrics seg2

Length seg2
2316

Alignment states and QC metrics seg3

Length seg3
2208

Alignment states and QC metrics seg4

Length seg4
1751

Alignment states and QC metrics seg5

Length seg5
1540

Alignment states and QC metrics seg6

Length seg6
1433

Alignment states and QC metrics seg7

Length seg7
1002

Alignment states and QC metrics seg8

Length seg8
865

INSDC seg4

Subtype seg4
H5

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H5
NA subtype
N1

Nucleotide mutations

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Substitutions
Deletions
None
Insertions
None