Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Influenza A/H1N1pdm
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_006NWS2.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_006NWS2.1/2025-05-12
A. USDA Swine Surveillance,
K. Lin &
C. Dohrn
Submission details
Submission ID
PV768573.1.seg4/PV768574.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-19 06:10:42 UTC
Date released
2025-08-19 09:01:00 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
6B.1A.5a.2a.1
Clade NA
D.2
Alignment states and QC metrics seg4
Completeness seg4
97.09%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
101
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.39%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
21
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2025-05-12
Isolate name
A/swine/Iowa/A02858616/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV768573.1
INSDC accession seg6
PV768574.1
NCBI release date
2025-06-10
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
409
A
seg4:
G
416
A
seg4:
A
429
G
seg4:
C
443
T
seg4:
A
456
G
Show more
seg6
seg6:
C
64
T
seg6:
A
144
G
seg6:
G
163
A
seg6:
C
320
T
seg6:
C
452
A
seg6:
T
506
A
seg6:
G
607
A
seg6:
C
671
T
seg6:
A
779
G
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
893
T
seg6:
G
914
T
seg6:
T
1016
C
seg6:
A
1049
G
seg6:
C
1061
T
seg6:
C
1187
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
NA
NA:
T
19
M
NA:
I
46
V
NA:
S
52
N
NA:
S
200
N
NA:
I
264
T
NA:
V
453
M
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
Load sequences