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GS_006NWUY.1
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Download metadata TSV
Display Name: USA/GS_006NWUY.1/2025-05-15
A. USDA Swine Surveillance,
K. Lin &
C. Dohrn
Submission details
Submission ID
PV768587.1.seg4/PV768588.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-19 06:10:42 UTC
Date released
2025-08-19 09:01:00 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
6B.1A.3
Clade NA
A.1.1
Alignment states and QC metrics seg4
Completeness seg4
97.09%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
97
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.39%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
54
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-05-15
Isolate name
A/swine/Minnesota/A02858625/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV768587.1
INSDC accession seg6
PV768588.1
NCBI release date
2025-06-10
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
seg4:
A
30
G
seg4:
T
46
G
seg4:
A
47
G
seg4:
G
57
A
seg4:
T
92
C
seg4:
C
115
T
seg4:
A
128
G
seg4:
C
164
T
seg4:
A
170
G
seg4:
G
188
A
seg4:
T
263
C
seg4:
G
292
A
seg4:
C
293
G
seg4:
T
308
C
seg4:
C
318
T
seg4:
G
322
A
seg4:
A
335
G
seg4:
T
353
C
Show more
seg6
seg6:
T
44
G
seg6:
C
64
T
seg6:
C
71
T
seg6:
A
89
G
seg6:
C
98
T
seg6:
A
120
C
seg6:
A
159
C
seg6:
G
163
C
seg6:
G
165
A
seg6:
A
184
G
seg6:
T
197
C
seg6:
T
205
A
seg6:
A
220
G
seg6:
T
224
C
seg6:
C
227
T
seg6:
C
229
T
seg6:
G
238
A
seg6:
A
259
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
T
15
I
HA1:
S
74
K
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
A
141
T
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
I
166
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
HA1:
S
203
T
HA1:
K
211
Q
HA1:
I
216
K
HA1:
R
223
Q
Show more
HA2
HA2:
S
40
G
HA2:
E
47
K
HA2:
K
82
R
HA2:
S
124
N
HA2:
T
147
A
HA2:
E
172
K
NA
NA:
T
19
M
NA:
I
38
L
NA:
K
51
Q
NA:
S
52
T
NA:
V
53
I
NA:
N
59
S
NA:
F
66
Y
NA:
N
71
S
NA:
S
74
F
NA:
R
77
K
NA:
K
84
R
NA:
P
93
H
NA:
I
122
M
NA:
I
216
V
NA:
K
222
N
NA:
D
248
N
NA:
I
264
T
NA:
I
365
T
Show more
SigPep
SigPep:
I
4
V
SigPep:
L
9
R
SigPep:
A
13
T
Deletions
None
Insertions
None
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