Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Influenza A/H3N2
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_0070WSC.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_0070WSC.1/2025-04-24
A. USDA Swine Surveillance,
K. Lin &
S. Clore
Submission details
Submission ID
PV667551.1.seg4/PV667552.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-09 05:32:48 UTC
Date released
2025-07-09 18:30:00 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
unassigned
Clade NA
unassigned
Alignment states and QC metrics seg4
Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
116
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
134
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Missouri
Collection date
2025-04-24
Isolate name
A/swine/Missouri/A02858570/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV667551.1
INSDC accession seg6
PV667552.1
NCBI release date
2025-05-21
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
T
26
C
seg4:
T
42
C
seg4:
C
44
T
seg4:
T
74
C
seg4:
C
77
T
seg4:
A
80
T
seg4:
G
91
A
seg4:
C
94
T
seg4:
G
113
A
seg4:
A
125
G
seg4:
G
137
A
seg4:
A
140
G
seg4:
C
152
A
seg4:
T
173
C
seg4:
C
202
T
seg4:
A
206
T
seg4:
T
212
C
seg4:
G
214
A
Show more
seg6
seg6:
G
30
A
seg6:
C
50
T
seg6:
C
51
A
seg6:
T
55
G
seg6:
T
62
C
seg6:
T
67
C
seg6:
T
70
C
seg6:
C
84
T
seg6:
T
88
C
seg6:
G
90
A
seg6:
A
91
G
seg6:
C
95
T
seg6:
A
105
G
seg6:
T
107
C
seg6:
G
108
A
seg6:
A
116
G
seg6:
G
117
T
seg6:
A
120
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
25
M
HA1:
S
46
F
HA1:
G
50
E
HA1:
K
82
S
HA1:
Y
94
H
HA1:
N
121
S
HA1:
D
122
N
HA1:
N
133
G
HA1:
R
141
K
HA1:
R
142
G
HA1:
K
158
N
HA1:
F
159
S
HA1:
K
160
R
HA1:
N
165
E
HA1:
V
186
A
HA1:
N
189
K
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
Q
65
R
HA2:
R
121
K
HA2:
D
160
N
HA2:
D
164
N
HA2:
G
181
E
HA2:
A
201
V
HA2:
R
216
K
NA
NA:
T
16
I
NA:
S
18
A
NA:
I
20
T
NA:
F
22
L
NA:
F
23
L
NA:
I
30
V
NA:
T
31
I
NA:
L
35
S
NA:
K
38
S
NA:
Y
40
H
NA:
E
41
G
NA:
F
42
Y
NA:
V
50
T
NA:
M
51
I
NA:
I
62
T
NA:
K
75
R
NA:
I
77
M
NA:
N
86
S
Show more
SigPep
SigPep:
Y
9
H
Deletions
None
Insertions
None
Load sequences