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GS_0071PSH.1
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Display Name: USA/GS_0071PSH.1/2025-06-11
A. USDA Swine Surveillance,
K. Lin &
C. Dohrn
Submission details
Submission ID
PV870642.1.seg4/PV870643.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-09 05:32:48 UTC
Date released
2025-07-09 19:05:56 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
unassigned
Clade NA
unassigned
Alignment states and QC metrics seg4
Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
202
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
146
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Pennsylvania
Collection date
2025-06-11
Isolate name
A/swine/Pennsylvania/A02858666/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV870642.1
INSDC accession seg6
PV870643.1
NCBI release date
2025-07-02
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
G
38
T
seg4:
A
43
G
seg4:
G
57
A
seg4:
T
60
A
seg4:
T
65
C
seg4:
G
79
A
seg4:
A
82
G
seg4:
C
94
T
seg4:
G
101
A
seg4:
C
107
T
seg4:
C
108
T
seg4:
T
110
G
seg4:
G
113
A
seg4:
A
125
G
seg4:
G
137
A
seg4:
A
138
T
seg4:
G
155
A
seg4:
A
156
G
Show more
seg6
seg6:
G
21
A
seg6:
G
30
A
seg6:
C
50
T
seg6:
T
53
C
seg6:
T
70
C
seg6:
C
72
T
seg6:
C
87
T
seg6:
T
88
C
seg6:
A
91
G
seg6:
A
93
G
seg6:
C
95
T
seg6:
T
106
C
seg6:
T
121
C
seg6:
A
126
T
seg6:
T
128
G
seg6:
A
130
G
seg6:
C
132
T
seg6:
T
133
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
G
5
E
HA1:
N
6
S
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
T
48
A
HA1:
G
50
R
HA1:
D
53
N
HA1:
E
62
K
HA1:
G
78
D
HA1:
K
83
E
HA1:
K
92
T
HA1:
N
96
S
HA1:
D
101
Y
HA1:
S
107
T
HA1:
T
117
N
HA1:
E
119
K
HA1:
N
121
T
Show more
HA2
HA2:
I
32
T
HA2:
K
39
G
HA2:
N
49
T
HA2:
L
55
V
HA2:
G
57
K
HA2:
K
123
R
HA2:
K
124
R
HA2:
K
143
R
HA2:
V
161
I
HA2:
D
164
N
HA2:
E
177
Q
HA2:
A
201
V
NA
NA:
T
16
I
NA:
I
17
T
NA:
F
23
L
NA:
I
30
V
NA:
T
31
I
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
43
D
NA:
S
44
P
NA:
P
45
S
NA:
L
52
F
NA:
I
62
K
NA:
I
73
V
NA:
L
81
T
NA:
N
93
K
NA:
P
126
F
NA:
N
141
K
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
V
14
I
SigPep:
F
15
I
Deletions
None
Insertions
None
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