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GS_0074CH6.1

Display Name: USA/GS_0074CH6.1/2024-12-10
Aufderhar, M.; Franzen, K.; Killian, M.; Lantz, K.; Stuber, T.; Hicks, J.; Norris, C.; Lakin, S.

Submission details

Submission ID
PQ831378.1.seg1/PQ831379.1.seg2/PQ831380.1.seg3/PQ831381.1.seg4/PQ831382.1.seg5/PQ831383.1.seg6/PQ831384.1.seg7/PQ831385.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-15 06:27:28 UTC
Date released
2025-01-15 06:48:15 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-15 06:29insdc_ingest_userOPEN

Authors

Author affiliations
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories

INSDC

Bioproject accession
PRJNA1102327
Biosample accession
SAMN45953451
INSDC accession seg1
PQ831378.1
INSDC accession seg2
PQ831379.1
INSDC accession seg3
PQ831380.1
INSDC accession seg4
PQ831381.1
INSDC accession seg5
PQ831382.1
INSDC accession seg6
PQ831383.1
INSDC accession seg7
PQ831384.1
INSDC accession seg8
PQ831385.1
NCBI release date
2025-01-03
SRA run accession
SRR31820835

Sample details

Collection country
USA
Collection subdivision level 1
CA
Collection date
2024-12-10
Isolate name
24-037172-001-original

Host

Host name scientific
Bos taurus
Host taxon id
9913

Alignment states and QC metrics seg1

Length seg1
2280

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1704

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1410

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H5

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H5
NA subtype
N1

Nucleotide mutations

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Substitutions
Deletions
None
Insertions
None