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GS_0075ZAY.1
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Download FASTA
Download metadata TSV
Display Name: USA/GS_0075ZAY.1/2025-06-17
A. USDA Swine Surveillance,
K. Lin &
C. Dohrn
Submission details
Submission ID
PV901730.1.seg4/PV901731.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-19 06:13:44 UTC
Date released
2025-08-19 09:03:03 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
6B.1A.1
Clade NA
A.1.1
Alignment states and QC metrics seg4
Completeness seg4
97.09%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
103
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.39%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
56
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Kansas
Collection date
2025-06-17
Isolate name
A/swine/Kansas/A02858686/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV901730.1
INSDC accession seg6
PV901731.1
NCBI release date
2025-07-08
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
66
G
seg4:
T
78
C
seg4:
T
89
G
seg4:
A
128
G
seg4:
T
140
C
seg4:
C
164
T
seg4:
A
170
T
seg4:
G
188
A
seg4:
G
205
A
seg4:
A
261
G
seg4:
G
267
A
seg4:
C
281
T
seg4:
C
284
T
seg4:
C
293
A
seg4:
C
318
T
seg4:
G
322
A
Show more
seg6
seg6:
C
43
T
seg6:
T
44
G
seg6:
T
46
C
seg6:
A
54
G
seg6:
A
57
G
seg6:
C
64
T
seg6:
A
159
C
seg6:
A
161
G
seg6:
A
203
G
seg6:
T
205
A
seg6:
G
207
C
seg6:
T
224
C
seg6:
C
229
T
seg6:
C
250
G
seg6:
T
272
C
seg6:
A
330
G
seg6:
C
338
T
seg6:
T
353
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
R
45
K
HA1:
N
64
D
HA1:
E
66
K
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
I
96
T
HA1:
D
97
N
HA1:
P
137
S
HA1:
I
149
V
HA1:
G
155
E
HA1:
S
162
N
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
T
HA1:
A
195
E
HA1:
S
203
T
HA1:
I
216
K
Show more
HA2
HA2:
I
91
V
HA2:
V
122
I
HA2:
S
124
T
HA2:
D
158
E
HA2:
P
160
S
HA2:
E
172
K
NA
NA:
S
12
L
NA:
I
13
T
NA:
T
16
A
NA:
I
17
V
NA:
T
19
M
NA:
K
51
Q
NA:
F
66
Y
NA:
V
67
L
NA:
S
74
F
NA:
A
81
G
NA:
I
108
V
NA:
I
149
V
NA:
L
206
V
NA:
R
220
K
NA:
K
222
N
NA:
V
234
M
NA:
D
248
N
NA:
R
257
K
Show more
SigPep
SigPep:
A
13
T
SigPep:
N
16
D
Deletions
None
Insertions
None
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