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GS_007CRK7.1

Display Name: USA/GS_007CRK7.1/2019-11-12
Jernigan, D.; Wentworth, D.; Barnes, J.; Garten, R.; Xu, X.

Submission details

Submission ID
MN976821.1.seg1/MN976822.1.seg2/MN976823.1.seg3/MN976824.1.seg4/MN976825.1.seg5/MN976826.1.seg6/MN976827.1.seg7/MN976828.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-15 06:27:28 UTC
Date released
2025-01-15 06:49:48 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-15 06:29insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA37813
INSDC accession seg1
MN976821.1
INSDC accession seg2
MN976822.1
INSDC accession seg3
MN976823.1
INSDC accession seg4
MN976824.1
INSDC accession seg5
MN976825.1
INSDC accession seg6
MN976826.1
INSDC accession seg7
MN976827.1
INSDC accession seg8
MN976828.1
NCBI release date
2020-01-28

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2019-11-12
Isolate name
EPI_ISL_401171

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2316

Alignment states and QC metrics seg2

Length seg2
2316

Alignment states and QC metrics seg3

Length seg3
2209

Alignment states and QC metrics seg4

Length seg4
1752

Alignment states and QC metrics seg5

Length seg5
1540

Alignment states and QC metrics seg6

Length seg6
1433

Alignment states and QC metrics seg7

Length seg7
1002

Alignment states and QC metrics seg8

Length seg8
865

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H1
NA subtype
N1

Nucleotide mutations

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Substitutions
Deletions
None
Insertions
None