Warning: Development or Keycloak main database is enabled. Development environment only.

GS_00DBMM3.1

Display Name: USA/GS_00DBMM3.1/2025-02-26
Rothstein, A. P.; Collins, S.; Muir, G.; Qiu, X.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV271548.1.seg1/PV271547.1.seg3/PV271543.1.seg4/PV271545.1.seg5/PV271544.1.seg7/PV271546.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 08:58:35 UTC
Date released
2025-04-03 09:03:39 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2025-02-26
Isolate name
GKISBBBC79658

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV271548.1
INSDC accession seg3
PV271547.1
INSDC accession seg4
PV271543.1
INSDC accession seg5
PV271545.1
INSDC accession seg7
PV271544.1
INSDC accession seg8
PV271546.1
NCBI release date
2025-03-13

Alignment states and QC metrics seg1

Length seg1
2318

Alignment states and QC metrics seg3

Length seg3
2208

Alignment states and QC metrics seg4

Length seg4
1737

Alignment states and QC metrics seg5

Length seg5
1543

Alignment states and QC metrics seg7

Length seg7
1004

Alignment states and QC metrics seg8

Length seg8
879

INSDC seg4

Subtype seg4
H3

Clade

HA subtype
H3

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None