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GS_00DBMVM.1

Display Name: USA/GS_00DBMVM.1/2025-02-25
Rothstein, A. P.; Collins, S.; Muir, G.; Qiu, X.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV271603.1.seg1/PV271602.1.seg2/PV271601.1.seg3/PV271597.1.seg4/PV271600.1.seg5/PV271599.1.seg6/PV271598.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 08:58:35 UTC
Date released
2025-04-03 09:03:39 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2025-02-25
Isolate name
GKISBBBE58978

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV271603.1
INSDC accession seg2
PV271602.1
INSDC accession seg3
PV271601.1
INSDC accession seg4
PV271597.1
INSDC accession seg5
PV271600.1
INSDC accession seg6
PV271599.1
INSDC accession seg7
PV271598.1
NCBI release date
2025-03-13

Alignment states and QC metrics seg1

Length seg1
2318

Alignment states and QC metrics seg2

Length seg2
2318

Alignment states and QC metrics seg3

Length seg3
2208

Alignment states and QC metrics seg4

Length seg4
1756

Alignment states and QC metrics seg5

Length seg5
1542

Alignment states and QC metrics seg6

Length seg6
1433

Alignment states and QC metrics seg7

Length seg7
1004

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H1
NA subtype
N1

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None