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GS_00DEKGA.1

Display Name: USA/GS_00DEKGA.1/2025-02-26
Gruner, W. E.; Muehleman, D. M.; Fries, A. C.; Hanson, J. F.; Kramer, D. L.; Demarcus, L. S.; Wasik, P. M.; Robbins, A. S.; Macias, E. A.; Garcia, J. M.; Renkas, M. C.; Hartless, T. R.; Hardy, J.

Submission details

Submission ID
PV359890.1.seg1/PV359889.1.seg2/PV359888.1.seg3/PV359883.1.seg4/PV359886.1.seg5/PV359885.1.seg6/PV359884.1.seg7/PV359887.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 08:58:35 UTC
Date released
2025-04-03 09:04:47 UTC

Authors

Author affiliations
United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2025-02-26
Isolate name
USAFSAM-15643

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV359890.1
INSDC accession seg2
PV359889.1
INSDC accession seg3
PV359888.1
INSDC accession seg4
PV359883.1
INSDC accession seg5
PV359886.1
INSDC accession seg6
PV359885.1
INSDC accession seg7
PV359884.1
INSDC accession seg8
PV359887.1
NCBI release date
2025-03-21

Alignment states and QC metrics seg1

Length seg1
2280

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1701

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1410

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H1
NA subtype
N1

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None