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GS_00DHTA7.1

Display Name: USA/GS_00DHTA7.1/2025-02-28
Gauger, P. C.; Moraes, D.; Silva, G. S.; Linhares, D. C.

Submission details

Submission ID
PV434088.1.seg1/PV434090.1.seg2/PV434089.1.seg3/PV434095.1.seg4/PV434091.1.seg5/PV434092.1.seg6/PV434093.1.seg7/PV434094.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 08:58:35 UTC
Date released
2025-04-03 09:05:20 UTC

Authors

Author affiliations
University of Pennsylvania Center of Excellence for Influenza Research and Response (CEIRR), CEIRR Influenza Data Processing and Communication Center

INSDC

Bioproject accession
PRJNA818275
INSDC accession seg1
PV434088.1
INSDC accession seg2
PV434090.1
INSDC accession seg3
PV434089.1
INSDC accession seg4
PV434095.1
INSDC accession seg5
PV434091.1
INSDC accession seg6
PV434092.1
INSDC accession seg7
PV434093.1
INSDC accession seg8
PV434094.1
NCBI release date
2025-04-02

Sample details

Collection country
USA
Collection date
2025-02-28

Host

Host name scientific
Sus scrofa
Host taxon id
9823
Is lab host
True

Alignment states and QC metrics seg1

Length seg1
2280

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1695

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1410

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H1
NA subtype
N1

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None