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Influenza A/H1N1pdm
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GS_00DJRKN.1
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Display Name: USA/GS_00DJRKN.1/2025-03-03
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV423127.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-09 02:50:24 UTC
Date released
2025-04-09 02:50:38 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47641789
INSDC accession
PV423127.1
NCBI release date
2025-04-08
NCBI update date
2025-04-08
SRA run accession
SRR32925701
Alignment states and QC metrics
Completeness
92.25%
Length
15037
Total ambiguous nucs
3
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
1
Total SNPs
224
Total unknown nucs
992
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-03
Isolate name
MN-MDH-RSVA-02418
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.1
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
C
431
T
T
697
C
T
1359
C
T
1380
C
G
1383
A
T
1422
C
T
1443
C
G
1662
A
T
1756
C
C
1788
T
C
1806
T
T
2165
C
T
2316
A
C
2362
T
A
2392
G
T
2481
C
Show more
Deletions
4592, 7516-7518
Insertions
ins_15115:T
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
122
A
F:
N
124
T
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
S
102
F
G:
T
118
I
G:
Q
127
L
G:
I
134
K
G:
P
206
Q
G:
K
209
R
G:
G
224
D
G:
S
243
I
G:
L
248
I
G:
K
253
Q
G:
K
262
E
G:
I
265
L
G:
G
272
S
G:
Y
273
H
Show more
L
L:
E
101
G
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1530
D
L:
N
1723
G
L:
K
1727
E
L:
G
1731
D
L:
Y
1732
C
L:
S
1745
L
L:
N
1916
Y
L:
V
1943
D
M
M:
M
73
L
N
N:
Y
216
H
N:
V
352
A
NS1
NS1:
T
121
I
P
P:
L
55
P
Deletions
None
Insertions
None
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