Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
RSV-A
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_00DJRU4.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00DJRU4.1/2025-03-05
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV423136.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-09 02:50:24 UTC
Date released
2025-04-09 02:50:38 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47641798
INSDC accession
PV423136.1
NCBI release date
2025-04-08
NCBI update date
2025-04-08
SRA run accession
SRR32925691
Alignment states and QC metrics
Completeness
94.13%
Length
15006
Total ambiguous nucs
2
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
210
Total unknown nucs
676
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-05
Isolate name
MN-MDH-RSVA-02427
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.1
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
A
327
T
C
624
T
T
697
C
T
826
C
T
868
C
T
905
C
A
940
C
T
977
C
A
1009
G
C
1012
T
A
1021
G
T
1028
C
C
1047
T
G
1050
A
A
1051
C
T
1359
C
Show more
Deletions
4592, 7516-7518
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
T
92
I
G:
L
101
F
G:
T
118
I
G:
I
134
K
G:
T
136
I
G:
P
206
Q
G:
K
209
R
G:
T
220
I
G:
G
224
E
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
S
277
P
G:
Y
280
H
Show more
L
L:
K
138
R
L:
I
139
V
L:
S
141
P
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
T
1718
I
L:
N
1723
G
L:
G
1731
D
L:
V
1943
D
M
M:
M
73
L
N
N:
Y
216
H
N:
V
352
A
NS2
NS2:
T
9
I
P
P:
L
55
P
SH
SH:
C
45
Y
Deletions
None
Insertions
None
Load sequences