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GS_00DJRW0.1
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Display Name: USA/GS_00DJRW0.1/2025-03-06
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV423138.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-09 02:50:24 UTC
Date released
2025-04-09 02:50:38 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47641800
INSDC accession
PV423138.1
NCBI release date
2025-04-08
NCBI update date
2025-04-08
SRA run accession
SRR32925689
Alignment states and QC metrics
Completeness
98.71%
Length
15046
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
230
Total unknown nucs
17
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-06
Isolate name
MN-MDH-RSVA-02429
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
G
198
A
A
399
G
G
551
A
G
555
A
T
659
C
G
664
A
T
697
C
G
1000
A
C
1012
T
T
1035
A
T
1048
C
G
1050
A
G
1086
T
T
1359
C
G
1662
A
T
1668
C
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Deletions
4177, 4592
Insertions
ins_3214:G
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
125
N
F:
A
518
V
G
G:
L
46
F
G:
S
64
L
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
L
142
S
G:
P
143
S
G:
G
224
E
G:
V
225
A
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
H
266
Y
G:
P
276
L
G:
D
284
G
G:
E
295
A
G:
Y
304
H
G:
L
314
P
G:
T
320
A
L
L:
I
59
M
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
K
1437
R
L:
L
1438
Q
L:
G
1550
S
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
P
1744
T
L:
S
1789
F
L:
S
1946
I
L:
Y
2163
N
M
M:
K
25
R
M:
M
43
I
N
N:
V
352
A
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
None
Insertions
None
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