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Influenza B/Victoria
Influenza A/H1N1pdm
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GS_00DJRXY.1
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Display Name: USA/GS_00DJRXY.1/2025-03-03
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV423139.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-09 02:50:24 UTC
Date released
2025-04-09 02:50:38 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47641801
INSDC accession
PV423139.1
NCBI release date
2025-04-08
NCBI update date
2025-04-08
SRA run accession
SRR32925688
Alignment states and QC metrics
Completeness
91.56%
Length
15047
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
207
Total unknown nucs
1106
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-03
Isolate name
MN-MDH-RSVA-02430
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
156
T
C
183
T
A
280
G
G
587
T
G
590
A
C
604
T
A
608
G
G
664
A
A
682
G
G
1034
A
G
1050
A
G
1077
A
G
1191
A
A
1197
C
T
1359
C
T
1413
A
T
1422
C
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Deletions
3213
Insertions
ins_3154:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
F:
S
276
N
G
G:
P
71
L
G:
H
90
Y
G:
L
97
F
G:
G
98
V
G:
L
101
S
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
G
224
E
G:
P
230
T
G:
S
243
T
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
D
284
G
G:
Y
304
H
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
T
1102
I
L:
L
1438
Q
L:
G
1550
S
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
N
N:
V
352
A
NS1
NS1:
I
71
V
NS2
NS2:
T
4
A
P
P:
T
92
I
Deletions
None
Insertions
None
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