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GS_00DJS1Q.1
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Display Name: USA/GS_00DJS1Q.1/2025-02-28
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV423143.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-09 02:50:24 UTC
Date released
2025-04-09 02:50:38 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47641805
INSDC accession
PV423143.1
NCBI release date
2025-04-08
NCBI update date
2025-04-08
SRA run accession
SRR32925683
Alignment states and QC metrics
Completeness
95.49%
Length
15054
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
8
Total SNPs
215
Total unknown nucs
507
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-28
Isolate name
MN-MDH-RSVA-02434
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
T
231
A
G
587
T
T
619
C
G
637
A
G
693
A
T
709
C
T
722
C
G
1034
A
G
1050
A
G
1077
A
A
1080
G
T
1359
C
A
1386
T
T
1413
A
T
1422
C
T
1708
C
Show more
Deletions
4592
Insertions
ins_15115:T, ins_3154:A, ins_15053:CAAAAG
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
G
G:
H
67
N
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
106
R
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
R
151
Q
G:
N
178
G
G:
K
221
R
G:
G
224
E
G:
S
243
I
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
P
274
L
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L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
K
1326
I
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
R
2117
K
N
N:
V
352
A
NS2
NS2:
R
32
K
P
P:
L
55
P
P:
T
92
M
P:
S
215
P
Deletions
None
Insertions
None
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