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GS_00DJSGU.1
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Display Name: USA/GS_00DJSGU.1/2025-03-05
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV423158.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-09 02:50:24 UTC
Date released
2025-04-09 02:50:38 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47641820
INSDC accession
PV423158.1
NCBI release date
2025-04-08
NCBI update date
2025-04-08
SRA run accession
SRR32925635
Alignment states and QC metrics
Completeness
94.67%
Length
15050
Total ambiguous nucs
2
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
209
Total unknown nucs
631
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-05
Isolate name
MN-MDH-RSVA-02449
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3.3
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
T
261
C
C
300
T
A
354
G
A
429
T
T
501
C
T
560
C
A
577
G
G
587
T
G
1034
A
G
1050
A
G
1077
A
T
1137
C
T
1218
C
T
1326
C
T
1359
C
G
1368
A
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Deletions
None
Insertions
ins_3154:A, ins_15110:CT
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
G
G:
P
71
L
G:
H
90
Y
G:
L
97
F
G:
L
101
F
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
K
204
N
G:
G
224
E
G:
G
232
E
G:
S
243
I
G:
E
308
K
L
L:
P
171
L
L:
K
180
N
L:
R
256
K
L:
S
504
T
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
S
1730
N
L:
G
1731
D
L:
I
1741
M
N
N:
V
352
A
P
P:
L
55
P
P:
T
92
M
SH
SH:
L
30
F
SH:
C
45
S
Deletions
None
Insertions
None
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