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GS_00DJSKM.1
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Display Name: USA/GS_00DJSKM.1/2025-03-04
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV423161.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-09 02:50:24 UTC
Date released
2025-04-09 02:50:38 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47641823
INSDC accession
PV423161.1
NCBI release date
2025-04-08
NCBI update date
2025-04-08
SRA run accession
SRR32925631
Alignment states and QC metrics
Completeness
96.55%
Length
15046
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
2
Total SNPs
231
Total unknown nucs
346
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-04
Isolate name
MN-MDH-RSVA-02452
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
G
198
A
C
228
T
G
551
A
C
622
T
G
664
A
T
673
C
T
697
C
G
1000
A
C
1012
T
C
1047
T
T
1048
C
G
1050
A
T
1224
C
T
1312
C
A
1335
G
T
1359
C
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Deletions
565, 4177, 4592
Insertions
ins_15115:T, ins_3213:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
L
111
I
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
S
111
F
G:
P
126
S
G:
I
134
K
G:
L
142
S
G:
S
144
G
G:
R
151
H
G:
G
224
V
G:
S
243
I
G:
T
245
N
G:
L
247
P
G:
K
262
E
G:
E
263
G
G:
I
265
L
G:
V
279
D
G:
D
284
G
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L
L:
Y
34
F
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
P
1089
S
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
I
1734
V
L:
S
1745
L
M
M:
M
43
I
M:
V
153
A
N
N:
V
97
A
N:
V
352
A
P
P:
L
55
P
P:
P
77
L
Deletions
None
Insertions
None
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