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GS_00DKQZT.1

Display Name: USA/GS_00DKQZT.1/2025-02-10
Paull, J.; Messer, K.; Adams, G.; Nabatanzi, D.; Dobbins, S.; Tomkins-Tinch, C.; Mboowa, G.; Luebbert, L.; Worby, C.; Wewior, N.; Samani, P.; DeRuff, K.; Blumenstiel, B.; Moreno, G.; Earl, A.; Gnirke, A.; MacInnis, B.; Sabeti, P.; Lemieux, J.; Park, D.

Submission details

Submission ID
PV478691.1.seg1/PV478692.1.seg2/PV478693.1.seg3/PV478694.1.seg4/PV478695.1.seg5/PV478696.1.seg6/PV478697.1.seg7/PV478698.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-11 15:22:48 UTC
Date released
2025-04-11 15:23:02 UTC

Authors

Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

INSDC

Bioproject accession
PRJNA1052714
Biosample accession
SAMN47859490
INSDC accession seg1
PV478691.1
INSDC accession seg2
PV478692.1
INSDC accession seg3
PV478693.1
INSDC accession seg4
PV478694.1
INSDC accession seg5
PV478695.1
INSDC accession seg6
PV478696.1
INSDC accession seg7
PV478697.1
INSDC accession seg8
PV478698.1
NCBI release date
2025-04-11
SRA run accession
SRR33051217

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2025-02-10
Isolate name
MA-Broad_MGH-23525

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics seg1

Length seg1
2207

Alignment states and QC metrics seg2

Length seg2
2117

Alignment states and QC metrics seg3

Length seg3
1931

Alignment states and QC metrics seg4

Length seg4
1562

Alignment states and QC metrics seg5

Length seg5
1613

Alignment states and QC metrics seg6

Length seg6
1250

Alignment states and QC metrics seg7

Length seg7
802

Alignment states and QC metrics seg8

Length seg8
747

INSDC seg4

Lineage seg4
vic

Clade

Lineage
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None