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GS_00DWCUT.1

Display Name: USA/GS_00DWCUT.1/2024-04-04
L. Guan, A. J. Eisfeld, D. Pattinson, C. Gu, A. Biswas, T. Maemura, S. Trifkovic, L. Babujee, R. Jr. Presler, R. Dahn, P. J. Halfmann, T. Barnhardt, G. Neumann, A. Thompson, A. K. Swinford, K. M. Dimitrov, K. Poulsen, Y. Kawaoka & R. Presler

Submission details

Submission ID
PQ068393.1.seg1/PQ068523.1.seg2/PQ068538.1.seg3/PQ067970.1.seg4/PQ068546.1.seg5/PQ068570.1.seg6/PQ068553.1.seg7/PQ068562.1.seg8
Submitting group
Date submitted
2025-12-11 15:51:28 UTC
Date released
2025-12-11 16:07:16 UTC

Authors

Author affiliations
University of Wisconsin-Madison, Department of Pathobiological Sciences

Sample details

Collection country
USA
Collection subdivision level 1
New Mexico
Collection date
2024-04-04
Isolate name
A240920343-93

Host

Host name scientific
Bos taurus
Host taxon id

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2024-07-29

Alignment states and QC metrics seg1

Length seg1
2280

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1704

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1410

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H5

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H5
NA subtype
N1

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None