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GS_00DWCYK.1

Display Name: USA/GS_00DWCYK.1/2025-03-31
Aufderhar, M.; Franzen, K.; Killian, M. L.; Lantz, K.; Stuber, T.; Hicks, J.; Norris, C.; Lakin, S.

Submission details

Submission ID
PV649049.1.seg2/PV649050.1.seg3/PV649051.1.seg4/PV649054.1.seg7/PV649055.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-21 03:49:07 UTC
Date released
2025-05-21 03:49:39 UTC

Authors

Author affiliations
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories

INSDC

Bioproject accession
PRJNA980729
Biosample accession
SAMN48412467
INSDC accession seg2
PV649049.1
INSDC accession seg3
PV649050.1
INSDC accession seg4
PV649051.1
INSDC accession seg7
PV649054.1
INSDC accession seg8
PV649055.1
NCBI release date
2025-05-16
SRA run accession
SRR33508853

Sample details

Collection country
USA
Collection subdivision level 1
NY
Collection date
2025-03-31
Isolate name
A/Quail/NY/25-010935-004-original/2025

Host

Host name scientific
Galliformes
Host taxon id
8976

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1704

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H5

Clade

HA subtype
H5

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None