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Influenza B/Victoria
Influenza B/Victoria
Influenza A/H1N1pdm
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RSV-A
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GS_00DWFEK.1
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Display Name: USA/GS_00DWFEK.1/2025-02-25
Fox,
E. B.; Garrigues,
J. M.; Green,
N. M.
Submission details
Submission ID
PV639782.1.seg3/PV639783.1.seg4/PV639784.1.seg5/PV639787.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-23 06:49:37 UTC
Date released
2025-05-23 06:49:52 UTC
Authors
Author affiliations
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Clade
Clade HA
V1A.3a.2
Alignment states and QC metrics seg3
Completeness seg3
97.15%
Length seg3
2181
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
45
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
93.26%
Length seg4
1749
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
54
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
96.17%
Length seg5
1683
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
28
Total unknown nucs seg5
0
Alignment states and QC metrics seg8
Completeness seg8
97.00%
Length seg8
1034
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
20
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2025-02-25
Isolate name
B/California/LACPHL-INF01903/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg3
PV639782.1
INSDC accession seg4
PV639783.1
INSDC accession seg5
PV639784.1
INSDC accession seg8
PV639787.1
NCBI release date
2025-05-14
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg3
seg3:
T
111
C
seg3:
C
117
T
seg3:
T
217
C
seg3:
T
339
C
seg3:
G
414
A
seg3:
T
423
C
seg3:
G
549
A
seg3:
A
618
G
seg3:
T
654
C
seg3:
A
771
G
seg3:
C
813
T
seg3:
G
867
A
seg3:
C
897
T
seg3:
A
935
G
seg3:
G
936
A
seg3:
C
1006
T
seg3:
C
1026
T
seg3:
A
1054
G
Show more
seg4
seg4:
A
117
G
seg4:
C
252
A
seg4:
G
267
A
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
G
457
A
seg4:
G
460
A
seg4:
A
463
G
seg4:
A
484
G
seg4:
C
509
T
Show more
seg5
seg5:
T
46
C
seg5:
C
172
T
seg5:
C
178
T
seg5:
A
224
G
seg5:
A
235
G
seg5:
T
298
C
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
G
412
A
seg5:
A
454
G
seg5:
C
523
T
seg5:
C
608
T
seg5:
A
634
G
seg5:
A
763
G
seg5:
C
841
T
seg5:
A
883
G
Show more
seg8
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
391
C
seg8:
C
419
T
seg8:
A
439
G
seg8:
G
478
A
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
C
666
T
seg8:
A
749
G
seg8:
T
775
C
seg8:
G
818
A
seg8:
C
882
T
seg8:
A
950
G
seg8:
T
963
C
Deletions
seg4:562-570
Insertions
None
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
NEP
NEP:
L
30
S
NEP:
S
93
P
NP
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
NS1:
A
212
V
NS1:
I
240
V
NS1:
V
263
M
PA
PA:
K
312
R
PA:
T
352
A
PA:
S
530
T
PA:
F
709
I
PA:
N
714
S
PA:
I
723
V
Deletions
HA1:162-164
Insertions
None
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