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GS_00DWFK8.1

Display Name: Saudi_Arabia/GS_00DWFK8.1/2025-02-26
Abdulgader, S. A.; Aziz, I. M.; Abdulwahed, A.; Alkubaisi, N. A.; Abdulmanea, A.; Almuqrin, A. M.; Almajhdi, F. N.

Submission details

Submission ID
PV653679.1.seg4
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-23 06:49:37 UTC
Date released
2025-05-23 06:49:52 UTC

Authors

Author affiliations
King Saud University, Department of Botany and Microbiology, College of Science

Clade

Clade HA
V1A.3a.2

Alignment states and QC metrics seg4

Completeness seg4
93.26%
Length seg4
1749
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
44
Total unknown nucs seg4
0

Sample details

Collection country
Saudi Arabia
Collection subdivision level 1
Riyadh
Collection date
2025-02-26
Isolate name
B/Riyadh/362/2025

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg4
PV653679.1
NCBI release date
2025-05-19

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • seg4:T153C
  • seg4:T159C
  • seg4:C270T
  • seg4:G297A
  • seg4:G300A
  • seg4:G312T
  • seg4:A318G
  • seg4:C378T
  • seg4:A427G
  • seg4:A435G
  • seg4:C441T
  • seg4:T444C
  • seg4:T456C
  • seg4:G457A
  • seg4:A462T
  • seg4:A484G
  • seg4:C507T
  • seg4:C509T
    • Deletions
    seg4:562-570
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:R279K
    • Deletions
    HA1:162-164
    Insertions
    None