Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
RSV B
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_00DWMNW.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00DWMNW.1/2025-04-04
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV629279.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:38:05 UTC
Date released
2025-05-28 12:38:20 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48396717
INSDC accession
PV629279.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33474428
Alignment states and QC metrics
Completeness
96.91%
Length
15136
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
129
Total unknown nucs
387
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-04
Isolate name
MN-MDH-RSVB-03019
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
G
86
A
T
498
C
G
513
T
G
579
A
A
600
G
C
607
T
T
960
C
C
998
A
T
1135
C
G
1385
A
T
1543
C
A
1606
G
G
1732
A
T
1846
C
C
2074
T
C
2198
T
C
2365
T
A
2415
G
Show more
Deletions
973, 4586
Insertions
None
Amino acid mutations
Substitutions
F
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
Y
177
H
L:
K
570
R
L:
L
1031
I
L:
R
1759
K
L:
T
1987
I
N
N:
V
97
I
NS2
NS2:
D
6
G
SH
SH:
A
39
T
Deletions
None
Insertions
None
Load sequences