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GS_00DWP13.1

Display Name: USA/GS_00DWP13.1/2025-04-11
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV640351.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:38:05 UTC
Date released
2025-05-28 12:38:20 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN48454322
INSDC accession
PV640351.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33542947

Alignment states and QC metrics

Completeness
91.09%
Length
15140
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
124
Total unknown nucs
1271

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-11
Isolate name
MN-MDH-RSVB-03097

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1.2

Nucleotide mutations

Substitutions

  • G513T
  • G579A
  • A580G
  • C583T
  • G599A
  • G639A
  • C904T
  • G1028A
  • G1385A
  • G1732A
  • G1768A
  • T1846C
  • A1969T
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • C3010T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:V360A
  • F:S389P

    • L

  • L:S169P
  • L:K570R
  • L:R1759K
  • L:T1987I
  • L:S2142N

    • N

  • N:V97I

    • NS2

  • NS2:D6N
  • NS2:R19K
    • Deletions
    None
    Insertions
    None