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GS_00DWP3Z.1
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Display Name: USA/GS_00DWP3Z.1/2025-04-14
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV640353.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:38:05 UTC
Date released
2025-05-28 12:38:20 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48454324
INSDC accession
PV640353.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33542945
Alignment states and QC metrics
Completeness
98.66%
Length
15138
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
157
Total unknown nucs
120
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-14
Isolate name
MN-MDH-RSVB-03099
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1.1
Nucleotide mutations
Substitutions
A
276
G
G
332
A
G
513
T
G
579
A
C
628
T
A
965
G
A
967
G
C
998
A
T
1333
C
G
1385
A
G
1732
A
T
1846
C
C
2074
T
C
2198
T
C
2554
T
C
2562
T
C
2691
T
C
2707
T
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Deletions
973, 4586
Insertions
ins_15092:AT
Amino acid mutations
Substitutions
F
F:
A
147
V
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
T
206
I
G:
P
214
S
G:
P
221
L
G:
L
250
P
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
N
166
Y
L:
K
570
R
L:
N
590
S
L:
R
1759
K
L:
T
1987
I
N
N:
V
97
I
NS1
NS1:
K
74
E
P
P:
D
225
N
SH
SH:
I
49
M
SH:
F
50
L
Deletions
None
Insertions
None
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