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GS_00DWPMW.1
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Display Name: USA/GS_00DWPMW.1/2025-04-18
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV640371.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:38:05 UTC
Date released
2025-05-28 12:38:20 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48454342
INSDC accession
PV640371.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33542925
Alignment states and QC metrics
Completeness
91.81%
Length
14862
Total ambiguous nucs
1
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
0
Total SNPs
177
Total unknown nucs
891
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-18
Isolate name
MN-MDH-RSVB-03117
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.4.1
Nucleotide mutations
Substitutions
G
513
T
T
540
C
G
579
A
G
781
A
T
808
C
A
822
G
C
883
T
A
1066
G
T
1171
C
G
1385
A
T
1411
C
C
1429
T
A
1597
G
T
1753
C
G
1801
A
T
1846
C
G
1978
A
C
2198
T
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Deletions
973, 3202-3204, 7608
Insertions
None
Amino acid mutations
Substitutions
F
F:
R
191
K
F:
R
209
Q
F:
N
554
K
G
G:
A
74
V
G:
R
98
K
G:
N
121
D
G:
K
123
T
G:
T
131
V
G:
I
137
T
G:
L
217
P
G:
I
227
T
G:
S
265
P
G:
Y
285
Q
G:
I
288
T
G:
I
310
T
G:
*
311
Q
L
L:
P
141
L
L:
L
454
F
L:
N
511
T
L:
A
1479
V
L:
V
1716
I
L:
G
1735
E
L:
S
1847
N
L:
T
1987
I
N
N:
V
97
I
NS2
NS2:
K
80
R
P
P:
T
60
I
P:
P
73
S
SH
SH:
D
64
N
Deletions
None
Insertions
None
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