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GS_00DWPSL.1
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Display Name: USA/GS_00DWPSL.1/2025-04-23
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV640376.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:38:05 UTC
Date released
2025-05-28 12:38:20 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48454347
INSDC accession
PV640376.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33542920
Alignment states and QC metrics
Completeness
93.67%
Length
15140
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
124
Total unknown nucs
878
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-23
Isolate name
MN-MDH-RSVB-03122
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.4.1.1
Nucleotide mutations
Substitutions
A
131
G
A
492
G
G
513
T
G
547
A
G
579
A
A
590
G
C
666
T
G
1385
A
A
1462
G
T
1555
C
G
1732
A
T
1846
C
T
1882
C
C
2074
T
C
2198
T
C
2227
T
A
2249
G
C
2554
T
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Deletions
973, 4586
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
N
105
S
F:
S
190
N
F:
S
211
N
G
G:
A
74
V
G:
R
98
K
G:
S
100
G
G:
P
214
S
G:
P
221
L
G:
H
257
Y
L
L:
K
260
R
L:
I
445
V
L:
K
570
R
L:
N
1662
T
L:
K
1704
N
L:
E
1738
K
L:
R
1759
K
L:
I
1834
V
M
M:
T
89
I
N
N:
V
97
I
N:
K
385
E
NS2
NS2:
T
3
A
NS2:
T
28
I
P
P:
D
229
G
Deletions
None
Insertions
None
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