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GS_00DWQX9.1
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Display Name: USA/GS_00DWQX9.1/2025-04-02
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV629349.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:44:21 UTC
Date released
2025-05-28 12:45:06 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48396646
INSDC accession
PV629349.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33474358
Alignment states and QC metrics
Completeness
91.51%
Length
15046
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
222
Total unknown nucs
1114
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-02
Isolate name
MN-MDH-RSVA-02947
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
A
274
G
C
379
T
T
463
C
A
514
T
G
587
A
A
612
G
A
623
G
G
664
A
A
706
G
A
712
G
G
1050
A
T
1061
C
T
1218
C
T
1242
C
T
1320
C
T
1359
C
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Deletions
4592
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
122
A
G
G:
P
71
L
G:
T
89
I
G:
H
90
Y
G:
L
101
F
G:
T
112
A
G:
S
121
G
G:
P
126
S
G:
I
134
K
G:
P
206
Q
G:
G
224
E
G:
S
243
I
G:
L
248
I
G:
K
253
Q
G:
G
254
R
G:
K
262
E
G:
I
265
L
G:
S
270
P
G:
P
276
Q
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L
L:
P
171
L
L:
T
179
A
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
G
1731
D
L:
V
1943
D
NS1
NS1:
N
69
D
NS2
NS2:
H
5
R
NS2:
T
9
A
P
P:
L
55
P
SH
SH:
C
45
Y
Deletions
None
Insertions
None
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