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GS_00DWSNR.1
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Display Name: USA/GS_00DWSNR.1/2025-04-12
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV640320.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:44:21 UTC
Date released
2025-05-28 12:45:06 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48454291
INSDC accession
PV640320.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33542981
Alignment states and QC metrics
Completeness
92.05%
Length
15046
Total ambiguous nucs
2
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
2
Total SNPs
207
Total unknown nucs
1030
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-12
Isolate name
MN-MDH-RSVA-03066
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
G
192
A
G
587
T
G
1034
A
G
1049
T
G
1050
A
G
1077
A
T
1359
C
T
1413
A
T
1422
C
C
1788
T
C
1806
T
T
2165
C
C
2181
T
C
2592
T
A
2695
G
A
2875
G
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Deletions
3181, 4174, 4175
Insertions
ins_3214:G, ins_15115:T
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
G
G:
P
71
L
G:
H
90
Y
G:
I
99
T
G:
L
104
P
G:
T
113
I
G:
L
115
P
G:
V
131
D
G:
I
134
K
G:
T
147
I
G:
N
178
G
G:
K
196
T
G:
K
213
R
G:
D
214
Y
G:
P
222
L
G:
G
224
E
G:
V
225
A
G:
S
243
I
G:
T
245
A
Show more
L
L:
N
37
D
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
A
1479
V
L:
N
1719
S
L:
N
1723
S
L:
N
1724
D
L:
E
1725
G
L:
G
1731
D
N
N:
V
352
A
P
P:
T
92
M
SH
SH:
R
59
K
Deletions
None
Insertions
None
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