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GS_00DWSVB.1
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Display Name: USA/GS_00DWSVB.1/2025-04-17
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV640327.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-28 12:44:21 UTC
Date released
2025-05-28 12:45:06 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48454298
INSDC accession
PV640327.1
NCBI release date
2025-05-21
NCBI update date
2025-05-21
SRA run accession
SRR33542974
Alignment states and QC metrics
Completeness
97.56%
Length
15043
Total ambiguous nucs
4
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
215
Total unknown nucs
190
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-04-17
Isolate name
MN-MDH-RSVA-03073
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
T
246
C
T
333
C
T
697
C
A
940
C
A
1009
G
C
1012
T
A
1021
G
T
1028
C
G
1050
A
A
1051
C
A
1078
G
G
1248
A
T
1281
C
T
1359
C
G
1368
A
T
1380
C
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Deletions
4592, 7516-7518
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
L
101
F
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
V
225
I
G:
G
232
R
G:
T
235
I
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
E
263
D
G:
I
265
L
G:
Y
273
H
G:
D
284
G
G:
V
303
A
G:
Y
304
H
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L
L:
T
104
A
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
G
1731
D
L:
A
1927
S
L:
V
1943
D
M
M:
M
73
L
N
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
Deletions
None
Insertions
None
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