Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Influenza A/H1N1pdm
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_00FCNXC.1
Download
Download FASTA
Download metadata TSV
Display Name: Switzerland/GS_00FCNXC.1/2025-04-29
Submission details
Submission ID
OZ273524.1.seg1/OZ273525.1.seg3/OZ273526.1.seg4/OZ273527.1.seg5/OZ273528.1.seg6/OZ273529.1.seg7/OZ273530.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-08 00:29:22 UTC
Date released
2025-07-08 00:29:47 UTC
Authors
Author affiliations
SIB, Ch. des Mines 9
INSDC
Bioproject accession
PRJEB77301
Biosample accession
SAMEA118572016
INSDC accession seg1
OZ273524.1
INSDC accession seg3
OZ273525.1
INSDC accession seg4
OZ273526.1
INSDC accession seg5
OZ273527.1
INSDC accession seg6
OZ273528.1
INSDC accession seg7
OZ273529.1
INSDC accession seg8
OZ273530.1
NCBI release date
2025-06-20
Clade
Clade HA
6B.1A.5a.2a.1
Clade NA
C.5.3.1
Alignment states and QC metrics seg1
Completeness seg1
100.00%
Length seg1
2280
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
83
Total unknown nucs seg1
0
Alignment states and QC metrics seg3
Completeness seg3
94.42%
Length seg3
2031
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
70
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
97.09%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
106
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
97.26%
Length seg5
1456
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
58
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
87.93%
Length seg6
1260
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
16
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
99.69%
Length seg7
979
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
25
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
96.18%
Length seg8
830
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
36
Total unknown nucs seg8
0
Sample details
Collection country
Switzerland
Collection subdivision level 1
VD
Collection date
2025-04-29
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
A
18
G
seg1:
A
90
C
seg1:
A
96
G
seg1:
A
108
G
seg1:
A
132
G
seg1:
A
138
G
seg1:
G
161
A
seg1:
A
174
G
seg1:
G
198
A
seg1:
T
201
C
seg1:
A
225
G
seg1:
C
242
T
seg1:
A
243
G
seg1:
C
285
A
seg1:
A
291
G
seg1:
C
309
T
seg1:
G
375
A
seg1:
A
441
G
Show more
seg3
seg3:
G
126
A
seg3:
C
153
T
seg3:
C
162
T
seg3:
C
165
T
seg3:
G
187
A
seg3:
G
204
A
seg3:
G
298
A
seg3:
G
423
A
seg3:
G
477
A
seg3:
G
498
A
seg3:
G
504
A
seg3:
G
597
A
seg3:
A
612
G
seg3:
G
618
A
seg3:
G
663
A
seg3:
C
670
T
seg3:
A
673
T
seg3:
T
687
C
Show more
seg4
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
C
155
T
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
A
231
C
seg4:
G
292
T
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
A
408
C
seg4:
G
416
A
seg4:
A
429
G
seg4:
C
443
T
Show more
seg5
seg5:
G
42
T
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
298
A
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
seg5:
T
402
C
seg5:
A
406
C
Show more
seg6
seg6:
G
163
A
seg6:
C
452
A
seg6:
G
607
A
seg6:
G
674
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
893
T
seg6:
G
914
T
seg6:
T
1016
C
seg6:
A
1049
G
seg6:
C
1187
T
seg6:
A
1193
G
seg6:
G
1365
A
seg6:
T
1403
C
seg6:
G
1415
T
seg7
seg7:
G
75
A
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
G
600
A
seg7:
C
622
A
seg7:
G
660
A
seg7:
T
663
C
seg7:
G
687
A
Show more
seg8
seg8:
C
6
A
seg8:
C
42
T
seg8:
C
54
T
seg8:
C
57
T
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
150
A
seg8:
C
153
T
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
204
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
G
363
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
M
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
S
52
N
NA:
S
200
N
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
L
226
I
NP:
N
377
S
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB2
PB2:
R
54
K
PB2:
M
66
I
PB2:
T
81
M
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
T
524
A
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
Load sequences