Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Influenza A/H1N1pdm
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_00FDNK0.1
Download
Download FASTA
Download metadata TSV
Display Name: Switzerland/GS_00FDNK0.1/2025-05-04
Submission details
Submission ID
OZ274491.1.seg1/OZ274492.1.seg4/OZ274493.1.seg5/OZ274494.1.seg6/OZ274495.1.seg7/OZ274496.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-08 14:31:13 UTC
Date released
2025-07-08 14:31:31 UTC
Authors
Author affiliations
SIB, Ch. des Mines 9
INSDC
Bioproject accession
PRJEB77301
Biosample accession
SAMEA118572018
INSDC accession seg1
OZ274491.1
INSDC accession seg4
OZ274492.1
INSDC accession seg5
OZ274493.1
INSDC accession seg6
OZ274494.1
INSDC accession seg7
OZ274495.1
INSDC accession seg8
OZ274496.1
NCBI release date
2025-06-22
Clade
Clade HA
6B.1A.5a.2a.1
Clade NA
C.5.3.1
Alignment states and QC metrics seg1
Completeness seg1
72.11%
Length seg1
1644
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
60
Total unknown nucs seg1
0
Alignment states and QC metrics seg4
Completeness seg4
96.52%
Length seg4
1670
Total ambiguous nucs seg4
0
Total deleted nucs seg4
21
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
103
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
91.38%
Length seg5
1368
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
56
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
85.48%
Length seg6
1225
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
16
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
71.79%
Length seg7
705
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
23
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
95.48%
Length seg8
815
Total ambiguous nucs seg8
0
Total deleted nucs seg8
9
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
32
Total unknown nucs seg8
0
Sample details
Collection country
Switzerland
Collection subdivision level 1
VD
Collection date
2025-05-04
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
C
666
T
seg1:
A
669
G
seg1:
G
673
A
seg1:
A
702
G
seg1:
T
774
C
seg1:
C
840
T
seg1:
A
846
G
seg1:
A
873
T
seg1:
A
876
G
seg1:
G
878
A
seg1:
G
896
A
seg1:
A
915
G
seg1:
A
1026
G
seg1:
G
1030
A
seg1:
A
1060
T
seg1:
G
1103
A
seg1:
G
1149
A
seg1:
G
1152
A
Show more
seg4
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
416
A
seg4:
A
429
G
seg4:
C
443
T
seg4:
A
456
G
seg4:
A
461
T
Show more
seg5
seg5:
C
108
T
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
298
A
seg5:
C
303
T
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
seg5:
T
402
C
seg5:
A
406
C
seg5:
C
426
T
Show more
seg6
seg6:
C
301
T
seg6:
C
452
A
seg6:
G
607
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
G
887
A
seg6:
C
893
T
seg6:
G
914
T
seg6:
A
1049
G
seg6:
T
1142
C
seg6:
C
1187
T
seg6:
A
1193
G
seg6:
A
1208
G
seg6:
A
1304
G
seg6:
G
1365
A
seg7
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
C
622
A
seg7:
G
660
A
seg7:
T
663
C
seg7:
G
687
A
seg7:
A
689
G
seg7:
G
711
A
seg7:
G
741
A
seg7:
A
750
G
Show more
seg8
seg8:
C
42
T
seg8:
C
54
T
seg8:
G
60
A
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
229
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
A
367
G
seg8:
A
375
T
seg8:
A
391
G
seg8:
G
396
A
Show more
Deletions
seg4:1266-1286, seg8:204-212
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
K
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
V
453
M
NEP
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NS1
NS1:
E
55
K
NS1:
E
71
M
NS1:
L
77
F
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PB2
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
R
368
K
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
HA2:72-78, NS1:68-70
Insertions
None
Load sequences