Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Influenza A
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_00FPJP9.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00FPJP9.1/2025-07-03
A. P. Rothstein,
S. Collins,
G. Muir,
A. Simas,
B. Lu,
B. Cosca,
B. Girinathan,
P. Leeson,
A. M. Plocik &
B. Simen
Submission details
Submission ID
PX103304.1.seg1/PX103303.1.seg3/PX103298.1.seg4/PX103301.1.seg5/PX103300.1.seg6/PX103299.1.seg7/PX103302.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-19 07:41:58 UTC
Date released
2025-08-19 07:48:41 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2025-07-03
Isolate name
A/California/GKISBBBE42294/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg1
PX103304.1
INSDC accession seg3
PX103303.1
INSDC accession seg4
PX103298.1
INSDC accession seg5
PX103301.1
INSDC accession seg6
PX103300.1
INSDC accession seg7
PX103299.1
INSDC accession seg8
PX103302.1
NCBI release date
2025-08-08
Alignment states and QC metrics seg1
Length seg1
2318
Alignment states and QC metrics seg3
Length seg3
2208
Alignment states and QC metrics seg4
Length seg4
1739
Alignment states and QC metrics seg5
Length seg5
1542
Alignment states and QC metrics seg6
Length seg6
1433
Alignment states and QC metrics seg7
Length seg7
1002
Alignment states and QC metrics seg8
Length seg8
877
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Clade
HA subtype
H1
NA subtype
N1
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
Deletions
None
Insertions
None
Load sequences