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GS_00FPKFR.1

Display Name: USA/GS_00FPKFR.1/2025-07-01
M. Aufderhar, K. Franzen, M. L. Killian, K. Lantz, T. Stuber, J. Hicks, C. Norris & S. Lakin

Submission details

Submission ID
PX104405.1.seg1/PX104406.1.seg2/PX104407.1.seg3/PX104408.1.seg4/PX104409.1.seg5/PX104410.1.seg6/PX104411.1.seg7/PX104412.1.seg8
Submitting group
Date submitted
2025-08-19 07:41:58 UTC
Date released
2025-08-19 07:48:41 UTC

Authors

Author affiliations
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories

INSDC

Bioproject accession
Biosample accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2025-08-08
SRA run accession

Sample details

Collection country
USA
Collection subdivision level 1
PA
Collection date
2025-07-01
Isolate name
A/Chukar/PA/25-019408-001-original/2025

Host

Host name scientific
Alectoris chukar
Host taxon id

Alignment states and QC metrics seg1

Length seg1
2280

Alignment states and QC metrics seg2

Length seg2
2274

Alignment states and QC metrics seg3

Length seg3
2151

Alignment states and QC metrics seg4

Length seg4
1704

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1338

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
838

INSDC seg4

Subtype seg4
H5

INSDC seg6

Subtype seg6
N1

Clade

HA subtype
H5
NA subtype
N1

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None