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GS_00FPKKG.1
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Display Name: USA/GS_00FPKKG.1/2025-07-01
M. Aufderhar,
K. Franzen,
M. L. Killian,
K. Lantz,
T. Stuber,
J. Hicks,
C. Norris &
S. Lakin
Submission details
Submission ID
PX104437.1.seg1/PX104438.1.seg2/PX104439.1.seg3/PX104440.1.seg4/PX104441.1.seg5/PX104442.1.seg6/PX104443.1.seg7/PX104444.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-19 07:41:58 UTC
Date released
2025-08-19 07:48:41 UTC
Authors
Author affiliations
USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories, National Veterinary Services Laboratories
INSDC
Bioproject accession
PRJNA980729
Biosample accession
SAMN49975074
INSDC accession seg1
PX104437.1
INSDC accession seg2
PX104438.1
INSDC accession seg3
PX104439.1
INSDC accession seg4
PX104440.1
INSDC accession seg5
PX104441.1
INSDC accession seg6
PX104442.1
INSDC accession seg7
PX104443.1
INSDC accession seg8
PX104444.1
NCBI release date
2025-08-08
SRA run accession
SRR34542496
Sample details
Collection country
USA
Collection subdivision level 1
PA
Collection date
2025-07-01
Isolate name
A/Mallard Duck/PA/25-019408-006-original/2025
Host
Host name scientific
Anas platyrhynchos
Host taxon id
8839
Alignment states and QC metrics seg1
Length seg1
2280
Alignment states and QC metrics seg2
Length seg2
2274
Alignment states and QC metrics seg3
Length seg3
2151
Alignment states and QC metrics seg4
Length seg4
1704
Alignment states and QC metrics seg5
Length seg5
1497
Alignment states and QC metrics seg6
Length seg6
1338
Alignment states and QC metrics seg7
Length seg7
982
Alignment states and QC metrics seg8
Length seg8
838
INSDC seg4
Subtype seg4
H5
INSDC seg6
Subtype seg6
N1
Clade
HA subtype
H5
NA subtype
N1
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
Deletions
None
Insertions
None
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