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Influenza A/H3N2
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Influenza B/Victoria
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Influenza A/H3N2
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Browse data
GS_00G41TN.1
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Display Name: USA/GS_00G41TN.1/2025-10-09
A. P. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
P. Leeson,
A. M. Plocik &
D. Gratalo
Submission details
Submission ID
PX462980.1.seg1/PX462976.1.seg4/PX462979.1.seg5/PX462978.1.seg6/PX462977.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-17 23:09:31 UTC
Date released
2025-10-17 23:16:36 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Clade
Clade HA
3C.2a1b.2a.2a.3a.1
Clade NA
B.4.2
Alignment states and QC metrics seg1
Completeness seg1
98.68%
Length seg1
2310
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
103
Total unknown nucs seg1
0
Alignment states and QC metrics seg4
Completeness seg4
100.00%
Length seg4
1737
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
125
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
98.53%
Length seg5
1543
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
57
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
100.00%
Length seg6
1442
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
6
Total SNPs seg6
78
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
97.76%
Length seg7
1004
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
28
Total unknown nucs seg7
0
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-10-09
Isolate name
A/New York/GKISBBBI28527/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg1
PX462980.1
INSDC accession seg4
PX462976.1
INSDC accession seg5
PX462979.1
INSDC accession seg6
PX462978.1
INSDC accession seg7
PX462977.1
NCBI release date
2025-10-17
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
seg1:
T
27
C
seg1:
C
54
T
seg1:
G
57
A
seg1:
T
75
C
seg1:
G
87
A
seg1:
C
192
T
seg1:
C
198
T
seg1:
T
255
C
seg1:
A
282
G
seg1:
C
289
A
seg1:
A
330
G
seg1:
A
336
G
seg1:
G
343
A
seg1:
G
347
A
seg1:
A
369
G
seg1:
G
375
A
seg1:
A
402
G
seg1:
T
417
C
Show more
seg4
seg4:
A
24
G
seg4:
T
42
A
seg4:
G
56
T
seg4:
C
72
A
seg4:
T
74
A
seg4:
C
77
T
seg4:
C
89
T
seg4:
G
155
A
seg4:
A
163
G
seg4:
C
189
T
seg4:
G
199
A
seg4:
C
203
A
seg4:
C
208
T
seg4:
G
213
A
seg4:
G
214
A
seg4:
G
222
A
seg4:
A
250
G
seg4:
A
251
G
Show more
seg5
seg5:
A
16
G
seg5:
C
29
T
seg5:
A
40
C
seg5:
G
96
A
seg5:
T
99
C
seg5:
G
207
A
seg5:
G
219
A
seg5:
C
249
T
seg5:
A
345
C
seg5:
A
351
G
seg5:
G
390
A
seg5:
G
432
T
seg5:
G
436
T
seg5:
T
447
C
seg5:
A
451
C
seg5:
C
459
T
seg5:
G
492
A
seg5:
A
513
G
Show more
seg6
seg6:
C
51
A
seg6:
A
60
G
seg6:
T
88
C
seg6:
T
96
C
seg6:
C
132
A
seg6:
C
138
A
seg6:
C
144
T
seg6:
C
205
T
seg6:
T
245
C
seg6:
G
270
A
seg6:
A
280
G
seg6:
A
281
G
seg6:
T
303
C
seg6:
C
345
A
seg6:
C
380
T
seg6:
G
408
A
seg6:
C
421
A
seg6:
C
429
T
Show more
seg7
seg7:
A
37
T
seg7:
C
188
T
seg7:
G
205
A
seg7:
G
214
T
seg7:
A
241
G
seg7:
T
292
C
seg7:
T
298
C
seg7:
G
340
A
seg7:
A
466
G
seg7:
A
481
G
seg7:
C
493
T
seg7:
A
517
G
seg7:
G
523
A
seg7:
A
637
G
seg7:
A
658
G
seg7:
G
680
A
seg7:
C
697
T
seg7:
T
703
C
Show more
Deletions
None
Insertions
ins_seg6:0:AGTA, ins_seg6:1436:CT
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
N
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
144
S
HA1:
N
145
S
Show more
HA2
HA2:
V
18
M
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
49
S
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
G
16
E
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
N
43
K
NA:
L
81
P
NA:
N
93
G
NA:
P
126
L
NA:
L
140
I
NA:
D
147
N
NA:
V
194
I
NA:
I
215
V
NA:
K
220
N
NA:
E
221
D
NA:
S
245
N
NA:
S
247
T
NA:
I
262
V
NA:
H
264
N
NA:
T
267
K
NA:
L
285
P
NA:
V
303
I
NA:
Y
310
H
Show more
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
None
Insertions
None
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